Chemical analysis of otoliths and other calcified structures continues to thrive. Analytical advances allow us to tap into the chemical and isotopic composition of otoliths, but also of many other archival structures, to reconstruct fish life histories at ever greater resolutions. More and more, biogeochemical tracers are being applied to enhance age estimation and interpretation, and to chronicle responses to environmental conditions and stressors, linking these to ecological, physiological, and life-history processes. Here, we review innovative approaches in the chemistry of archival tissues, highlighting our current work and case studies focusing primarily on otoliths and their outstanding value for fisheries and ecosystem-based management. We summarise recent milestones and future challenges, turning the spotlight on areas where otolith chemistry is rapidly expanding to further support decision-making. We do this across application-oriented research areas that combine biogeochemical analysis with a host of disciplines. Overall, emerging research directions that apply hard part chemistry to unravel past food webs, combat seafood fraud, as well as resolve and integrate growth, thermal and metabolic stress, movement, or reproductive life histories provide a clear-sighted focus to examine how harvesting and global change may impact fish health and fisheries productivity. Ultimately, these emerging approaches on otoliths and calcified structures provide a wealth of information that can be harnessed to strengthen fisheries and ecosystem-based management.